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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19871678_19925249_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19871678 - 19925249
Intron Length:
53572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CTTTCTTTTAAG
Flanking Amino Acid:
NEESFNAVQDWSTQIKTYSW
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
81.8
0.72
0.9
86.8
24.5
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
55.9
0.04
1.9
64.21
43.7

Associated Gene:

Gene:
RAB3C
Ensembl Gene ID:
ENSAPLG00000005718
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005901
19806233 - 19939303
133071