Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19925375_19939055_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19925375 - 19939055

Intron Length:

13681

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTATTTTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATACAT

U12 Branch Point Sequence:

TATACATCAAAC

Flanking Amino Acid:

ERGKHLAEQLGFEFFEASAK

Intron Amino Acid Position:

166

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

78.7

29.9

Major BPS

74.9

0.62

81.3

29.9

Major PPT

84.9

0.78

0.7

84.9

29.7

Minor 5ss

32.9

-1.9

2.9

37.3

41.2

Minor BPS

48.7

-0.1

1.9

64.09

40.2

Associated Gene:

Gene:

RAB3C

Ensembl Gene ID:

ENSAPLG00000005718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005901

19806233 - 19939303

133071