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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19986905_19987427_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19986905 - 19987427
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTTCT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTTTTTAAAT
Flanking Amino Acid:
QSLRKMVIDIVLATDMSKHM
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
72.3
32.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.3
0.61
1
75.7
38.5
Minor 5ss
40
-1.1
3
56.6
41.9
Minor BPS
73.7
0.82
1.3
85.52
34.2

Associated Gene:

Gene:
PDE4D
Ensembl Gene ID:
ENSAPLG00000005416
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022760
19985027 - 20169261
184235
ENSAPLT00000046795
19985027 - 20279283
294257
ENSAPLT00000005615
19985027 - 20004891
19865
ENSAPLT00000030836
19984697 - 20131772
147076
ENSAPLT00000029692
19984697 - 20279283
294587
ENSAPLT00000027354
19985027 - 20198150
213124