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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19991313_19992680_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19991313 - 19992680
Intron Length:
1368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTAC
5'SS Class:
strong_major
3'SS Sequence:
CATGGTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATTTCTATTT
Flanking Amino Acid:
HVLLSTPALEAVFTDLEILA
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.7
34.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.1
0.47
0.9
61.8
44.2
Minor 5ss
43.5
-0.7
3
58.3
46.6
Minor BPS
47
-0.1
1.8
64.32
41

Associated Gene:

Gene:
PDE4D
Ensembl Gene ID:
ENSAPLG00000005416
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029692
19984697 - 20279283
294587
ENSAPLT00000027354
19985027 - 20198150
213124
ENSAPLT00000022760
19985027 - 20169261
184235
ENSAPLT00000046795
19985027 - 20279283
294257
ENSAPLT00000005615
19985027 - 20004891
19865
ENSAPLT00000030836
19984697 - 20131772
147076