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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19992846_19992934_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19992846 - 19992934
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGCTTTGTAATC
Flanking Amino Acid:
LTVIMHTIFQERDLLKTFKI
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
82.9
36.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
24.8
-2.9
3.6
33.4
41.8
Minor BPS
49.6
-0
2
61.57
38.9

Associated Gene:

Gene:
PDE4D
Ensembl Gene ID:
ENSAPLG00000005416
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022760
19985027 - 20169261
184235
ENSAPLT00000005615
19985027 - 20004891
19865
ENSAPLT00000030836
19984697 - 20131772
147076
ENSAPLT00000029692
19984697 - 20279283
294587
ENSAPLT00000027354
19985027 - 20198150
213124