Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19992846_19994015_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19992846 - 19994015

Intron Length:

1170

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGAAT

5'SS Class:

major

3'SS Sequence:

TTTTCTTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TGCTTTGTAATC

Flanking Amino Acid:

KTDQEDVLAKERDLLKTFKI

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.2

0.55

1.1

39.3

Major BPS

84.4

0.85

1.1

34.5

Major PPT

90.8

0.92

0.6

85.1

29.7

Minor 5ss

31.9

-2.1

3.6

47.3

48.3

Minor BPS

49.6

-0

61.57

38.9

Associated Gene:

Gene:

PDE4D

Ensembl Gene ID:

ENSAPLG00000005416

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046795

19985027 - 20279283

294257