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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19997843_20035694_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19997843 - 20035694
Intron Length:
37852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
ACTAACTTATGC
Flanking Amino Acid:
HSVSEMASNKFKRMLNRELT
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
44.9
-0.4
2
54.35
43.3

Associated Gene:

Gene:
PDE4D
Ensembl Gene ID:
ENSAPLG00000005416
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027354
19985027 - 20198150
213124
ENSAPLT00000022760
19985027 - 20169261
184235
ENSAPLT00000046795
19985027 - 20279283
294257
ENSAPLT00000030836
19984697 - 20131772
147076
ENSAPLT00000029692
19984697 - 20279283
294587