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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20083989_20085297_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20083989 - 20085297
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
LTNLQDRAPSKRSPMCNQPS
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.5
28.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.4
0.89
0.7
89.2
27.3
Minor 5ss
33.5
-1.9
3.3
43.7
38.1
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
PDE4D
Ensembl Gene ID:
ENSAPLG00000005416
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029692
19984697 - 20279283
294587
ENSAPLT00000027354
19985027 - 20198150
213124
ENSAPLT00000022760
19985027 - 20169261
184235
ENSAPLT00000046795
19985027 - 20279283
294257
ENSAPLT00000030836
19984697 - 20131772
147076