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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20085372_20090281_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20085372 - 20090281
Intron Length:
4910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTATGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTAGACTGAAAC
Flanking Amino Acid:
DDLIVTPFAQVLASLRTVRN
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.6
40.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
80
0.67
1
77.1
41.6
Minor 5ss
38.3
-1.3
3.1
49.3
46.7
Minor BPS
48.9
-0.1
1.8
62.95
41.6

Associated Gene:

Gene:
PDE4D
Ensembl Gene ID:
ENSAPLG00000005416
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029692
19984697 - 20279283
294587
ENSAPLT00000027354
19985027 - 20198150
213124
ENSAPLT00000022760
19985027 - 20169261
184235
ENSAPLT00000046795
19985027 - 20279283
294257
ENSAPLT00000030836
19984697 - 20131772
147076