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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20090319_20104173_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20090319 - 20104173
Intron Length:
13855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TAACATCTAACT
Flanking Amino Acid:
MSRNSSIASDIHGDDLIVTP
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77.1
31.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.7
0.8
0.8
83.7
31.2
Minor 5ss
35.4
-1.7
3.2
46.1
42.2
Minor BPS
49.4
0.04
1.8
69.88
40.1

Associated Gene:

Gene:
PDE4D
Ensembl Gene ID:
ENSAPLG00000005416
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022760
19985027 - 20169261
184235
ENSAPLT00000046795
19985027 - 20279283
294257
ENSAPLT00000030836
19984697 - 20131772
147076
ENSAPLT00000029692
19984697 - 20279283
294587
ENSAPLT00000027354
19985027 - 20198150
213124