Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20104366_20198025_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20104366 - 20198025

Intron Length:

93660

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTATGAGAC

5'SS Class:

major

3'SS Sequence:

TTTCTTTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATAAAT

U12 Branch Point Sequence:

ATGGCATAAATC

Flanking Amino Acid:

KPIDIKQQKRRFDVDNGTSS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.55

62.5

36.3

Major BPS

62.2

0.3

1.1

68.9

Major PPT

95.4

1.02

0.5

91.9

18.9

Minor 5ss

37.3

-1.4

3.4

50.5

46.2

Minor BPS

46.8

-0.2

57.38

41.8

Associated Gene:

Gene:

PDE4D

Ensembl Gene ID:

ENSAPLG00000005416

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027354

19985027 - 20198150

213124