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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_2025604_2026230_F

Intron Information:

Intron Rank:
3
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
2025604 - 2026230
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGTCTTTA
5'SS Class:
weak_minor
3'SS Sequence:
CGACTACACCAAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTCTCCCAGATA
Flanking Amino Acid:
TVFGTYYGIAGNFTVTGPTA
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.02
1.2
57
38.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
48.4
-0
1.1
42.2
36.7
Minor 5ss
60.1
0.34
2.3
75.5
40.6
Minor BPS
49.3
-0
2
66.69
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004753
2020329 - 2029689
9361