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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_2036770_2039527_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2036770 - 2039527
Intron Length:
2758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
AGTCTTATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGTAATTAATG
Flanking Amino Acid:
FQMTWSVKTDDTPMPLGSMV
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
69.4
36.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.1
0.61
0.9
70.5
39.3
Minor 5ss
29.2
-2.4
2.7
30.5
36.3
Minor BPS
52.6
-0
1.8
60.12
41.7

Associated Gene:

Gene:
TPGS2
Ensembl Gene ID:
ENSAPLG00000004688
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004839
2030607 - 2050674
20068