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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_2039616_2047101_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2039616 - 2047101
Intron Length:
7486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TTTCCCATAACA
Flanking Amino Acid:
ERHAIISWEQKNSCVLPEDL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
80
0.68
0.9
73.8
40.8
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
75
0.78
1.6
86.46
31.3

Associated Gene:

Gene:
TPGS2
Ensembl Gene ID:
ENSAPLG00000004688
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004839
2030607 - 2050674
20068