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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_2054236_2055977_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2054236 - 2055977
Intron Length:
1742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTGTCTTTCATC
Flanking Amino Acid:
MVYVSGASTKGNLRT
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
80
0.75
1
78.6
31
Major PPT
83.3
0.75
0.8
77
30.6
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
63.8
0.42
1.7
73.46
38.5

Associated Gene:

Gene:
KIAA1328
Ensembl Gene ID:
ENSAPLG00000004859
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005003
2054220 - 2191930
137711