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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_2061284_2069857_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2061284 - 2069857
Intron Length:
8574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CAATTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCTTTCAATT
Flanking Amino Acid:
RIANLIKELARVSEEKEVTE
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.3
0.68
0.9
77.2
36.5
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
63.9
0.51
1.5
81.05
34.8

Associated Gene:

Gene:
KIAA1328
Ensembl Gene ID:
ENSAPLG00000004859
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005003
2054220 - 2191930
137711