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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20670141_20671068_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20670141 - 20671068
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TATACAATAATG
Flanking Amino Acid:
LSESVRTRTLMVQAFSRCIL
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
76.8
0.67
1
66
40.9
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
48.8
-0.2
2
60.1
41.2

Associated Gene:

Gene:
DEPDC1B
Ensembl Gene ID:
ENSAPLG00000009617
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020459
20668660 - 20691054
22395
ENSAPLT00000010050
20668660 - 20691204
22545