Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20671236_20678764_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20671236 - 20678764

Intron Length:

7529

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TTGTATAAACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

ATTTCCTGATCT

Flanking Amino Acid:

NFFDIFVCVLGLLQKHSKAV

Intron Amino Acid Position:

300

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.7

1.08

0.7

85.2

32.2

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

0.32

1.1

57.2

46.4

Minor 5ss

34.4

-1.8

3.3

49.7

46.6

Minor BPS

69.3

0.68

1.7

87.75

37.2

Associated Gene:

Gene:

DEPDC1B

Ensembl Gene ID:

ENSAPLG00000009617

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010050

20668660 - 20691204

22545

ENSAPLT00000020459

20668660 - 20691054

22395