Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20681565_20682347_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20681565 - 20682347

Intron Length:

783

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCATA

5'SS Class:

strong_major

3'SS Sequence:

TGTATTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

GTTTATGTATTT

Flanking Amino Acid:

EEIWKSMTLSRLQKVLGLNS

Intron Amino Acid Position:

193

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.8

83.2

30.8

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

85.9

0.81

0.8

80.7

36.7

Minor 5ss

37.5

-1.4

48.1

47.6

Minor BPS

45.3

-0.2

2.3

69.14

42.4

Associated Gene:

Gene:

DEPDC1B

Ensembl Gene ID:

ENSAPLG00000009617

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020459

20668660 - 20691054

22395

ENSAPLT00000010050

20668660 - 20691204

22545