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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20694839_20696048_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20694839 - 20696048
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCTTACCT
Flanking Amino Acid:
WKKYMTTIQLVQFIMITVHI
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
77.8
31.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.6
0.96
0.6
88.3
21.3
Minor 5ss
34.5
-1.8
2.9
48.3
41.8
Minor BPS
85.2
1.18
1.4
100
28.8

Associated Gene:

Gene:
ELOVL7
Ensembl Gene ID:
ENSAPLG00000009660
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010063
20694303 - 20727369
33067