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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20696186_20698786_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20696186 - 20698786
Intron Length:
2601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGAAG
5'SS Class:
major
3'SS Sequence:
ATTCCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TACTACTTTATT
Flanking Amino Acid:
TWWFGVKFAAGGLGTFHALL
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
62.4
43.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83
0.74
0.8
76.9
31.2
Minor 5ss
30.3
-2.3
3.3
38.8
46.6
Minor BPS
56.7
0.29
1.8
73.87
43.2

Associated Gene:

Gene:
ELOVL7
Ensembl Gene ID:
ENSAPLG00000009660
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010063
20694303 - 20727369
33067