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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_2069933_2118065_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2069933 - 2118065
Intron Length:
48133

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACA|GCTAGAGGA
5'SS Class:
weak_major
3'SS Sequence:
ATTCATGAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTGACTCTAACT
Flanking Amino Acid:
EQESFEKKIRHIFSLTSDVS
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50
0
1.5
51.4
42.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
60.9
0.25
1.1
55.4
43
Minor 5ss
18
-3.7
3.7
27.8
37
Minor BPS
63.5
0.5
1.7
81.43
40.1

Associated Gene:

Gene:
KIAA1328
Ensembl Gene ID:
ENSAPLG00000004859
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005003
2054220 - 2191930
137711