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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20700651_20701053_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20700651 - 20701053
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TTCAATCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTTTCAATC
Flanking Amino Acid:
DYSRSPTALRMVRTCWLYYF
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.9
40
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.7
0.67
0.9
73.2
36.7
Minor 5ss
41.8
-0.9
2.8
49.2
41.2
Minor BPS
62.4
0.37
1.5
70.65
34.9

Associated Gene:

Gene:
ELOVL7
Ensembl Gene ID:
ENSAPLG00000009660
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010063
20694303 - 20727369
33067