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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20701135_20703357_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20701135 - 20703357
Intron Length:
2223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATAAGAT
Flanking Amino Acid:
VILSLYMTYEFLMSGWATGY
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
100
1.24
0.5
100
0
Major PPT
80.1
0.68
0.8
73.5
37.1
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
49.2
0.02
2.2
78.73
43

Associated Gene:

Gene:
ELOVL7
Ensembl Gene ID:
ENSAPLG00000009660
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010063
20694303 - 20727369
33067