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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20706228_20726533_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
20706228 - 20726533
Intron Length:
20306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TTTTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATCCAT
U12 Branch Point Sequence:
AAATCCATATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59.5
39.8
Major BPS
60.7
0.27
1.2
70.5
35.7
Major PPT
90.2
0.9
0.6
85.5
21.7
Minor 5ss
28.8
-2.4
3
29.1
36.7
Minor BPS
51.4
0.12
1.9
69.88
40.7

Associated Gene:

Gene:
ELOVL7
Ensembl Gene ID:
ENSAPLG00000009660
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010063
20694303 - 20727369
33067