About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20748730_20750981_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20748730 - 20750981
Intron Length:
2252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GAATTTTTATTT
Flanking Amino Acid:
EPVPDDVSDKCLPQQHLNPA
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86
0.81
0.7
85.8
28.6
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
53.7
0.2
1.5
66.07
38.9

Associated Gene:

Gene:
ERCC8
Ensembl Gene ID:
ENSAPLG00000009673
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010121
20748331 - 20781439
33109