Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20756502_20765884_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20756502 - 20765884

Intron Length:

9383

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTA|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTATTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTAATTAATA

Flanking Amino Acid:

WNSSTGENTLVNYGKVRNES

Intron Amino Acid Position:

342

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

83.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

92.9

0.96

0.7

88.5

28.1

Minor 5ss

-0.2

2.8

68.9

36.6

Minor BPS

68.1

0.57

1.7

81.86

32.7

Associated Gene:

Gene:

ERCC8

Ensembl Gene ID:

ENSAPLG00000009673

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010121

20748331 - 20781439

33109