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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20766010_20767363_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20766010 - 20767363
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
TTTTTCCTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTTTCCTGACA
Flanking Amino Acid:
GEKTKASSEAANTAHNGRVN
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.9
41
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
83.6
0.76
0.9
80.7
31.5
Minor 5ss
30.7
-2.2
3.1
38.3
46.6
Minor BPS
69.4
0.61
1.6
82.95
30.8

Associated Gene:

Gene:
ERCC8
Ensembl Gene ID:
ENSAPLG00000009673
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010121
20748331 - 20781439
33109