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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20767468_20770165_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20767468 - 20770165
Intron Length:
2698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGATA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATACAT
U12 Branch Point Sequence:
TTTCCCTAATGC
Flanking Amino Acid:
PRHEYILATASADSKVKLWD
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
72
39.3
Major BPS
62.6
0.31
1.1
70.6
34.3
Major PPT
84.3
0.77
0.7
84.8
30
Minor 5ss
33.8
-1.8
3.6
47.6
48.1
Minor BPS
48.4
-0.1
2.2
67.52
44.1

Associated Gene:

Gene:
ERCC8
Ensembl Gene ID:
ENSAPLG00000009673
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010121
20748331 - 20781439
33109