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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20771826_20772231_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20771826 - 20772231
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
ATTTTTTCAGCT
Flanking Amino Acid:
PIATKHCLVAVGTKSPKVQL
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
84.7
0.78
0.8
78.9
33.2
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
57
0.3
1.7
78.14
38.4

Associated Gene:

Gene:
ERCC8
Ensembl Gene ID:
ENSAPLG00000009673
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010121
20748331 - 20781439
33109