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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20774087_20779591_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20774087 - 20779591
Intron Length:
5505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TACTTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTTTACTTCATT
Flanking Amino Acid:
YTCKAVCSVGRSHPDVHRFS
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
76.9
0.61
0.8
74.7
34.5
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
67.2
0.62
1.9
88.84
36.2

Associated Gene:

Gene:
ERCC8
Ensembl Gene ID:
ENSAPLG00000009673
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010121
20748331 - 20781439
33109