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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20779694_20779834_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20779694 - 20779834
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTACACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
AGTACTTTATTT
Flanking Amino Acid:
SLDIEPVEGRYMLSGGSDGV
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
82.6
29.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
82
0.72
0.8
78.4
34.9
Minor 5ss
41.2
-1
2.8
53
39
Minor BPS
57.2
0.3
1.6
71.77
39.5

Associated Gene:

Gene:
ERCC8
Ensembl Gene ID:
ENSAPLG00000009673
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010121
20748331 - 20781439
33109