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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20813218_20821279_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20813218 - 20821279
Intron Length:
8062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GGATTTTTATTT
Flanking Amino Acid:
EMGDFPTEWEAWIRKKRKDP
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.8
0.89
0.7
85
29
Minor 5ss
39.5
-1.2
3.2
58.6
45.9
Minor BPS
52.9
0.17
1.5
65.61
39.4

Associated Gene:

Gene:
NDUFAF2
Ensembl Gene ID:
ENSAPLG00000009796
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010194
20781438 - 20833827
52390