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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20821321_20833569_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20821321 - 20833569
Intron Length:
12249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTATCTAATT
Flanking Amino Acid:
KKRKDPPTIEEILRNESYRQ
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
100
1.24
0.5
100
0
Major PPT
72.6
0.51
0.9
69.2
41.8
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
56.3
0.28
1.8
77.38
39.4

Associated Gene:

Gene:
NDUFAF2
Ensembl Gene ID:
ENSAPLG00000009796
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010194
20781438 - 20833827
52390