Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20945885_20971011_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

20945885 - 20971011

Intron Length:

25127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAACGTAT

5'SS Class:

weak_major

3'SS Sequence:

TTTTCCTGCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTTAA

U12 Branch Point Sequence:

TTCTCGATAACT

Flanking Amino Acid:

SPCKPKGNVPSFHLSGTVTE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.7

0.21

1.2

60.6

40.8

Major BPS

65.6

0.39

0.9

55.7

32.1

Major PPT

80.3

0.68

0.9

76.1

32.5

Minor 5ss

46.1

-0.4

3.2

69.5

42.4

Minor BPS

59.1

0.37

2.3

84.81

41.7

Associated Gene:

Gene:

ZSWIM6

Ensembl Gene ID:

ENSAPLG00000006992

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030079

20945803 - 21027713

81911