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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20996884_20998487_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20996884 - 20998487
Intron Length:
1604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
GTGAAAATGACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GCTTTCTGAACT
Flanking Amino Acid:
ALPQGANANQDSSNRPHRTV
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.1
38.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
51.7
0.04
1.2
43.8
45.4
Minor 5ss
36
-1.6
3.2
47
48.3
Minor BPS
70.3
0.71
1.4
81.31
40.1

Associated Gene:

Gene:
ZSWIM6
Ensembl Gene ID:
ENSAPLG00000006992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036097
20913850 - 21027713
113864
ENSAPLT00000033712
20958094 - 21027713
69620
ENSAPLT00000030079
20945803 - 21027713
81911
ENSAPLT00000047151
20946524 - 21027713
81190
ENSAPLT00000007273
20944692 - 21027713
83022
ENSAPLT00000046134
20911869 - 21027713
115845