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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_20999096_21002162_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20999096 - 21002162
Intron Length:
3067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTTTTCTAACA
Flanking Amino Acid:
QLEMFRAQKKELLHKGVTSI
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
78.6
35.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.3
0.64
0.9
73.9
34.4
Minor 5ss
35.7
-1.6
3.4
48.7
47.5
Minor BPS
64.4
0.45
1.6
75.11
36.7

Associated Gene:

Gene:
ZSWIM6
Ensembl Gene ID:
ENSAPLG00000006992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030079
20945803 - 21027713
81911
ENSAPLT00000047151
20946524 - 21027713
81190
ENSAPLT00000007273
20944692 - 21027713
83022
ENSAPLT00000046134
20911869 - 21027713
115845
ENSAPLT00000036097
20913850 - 21027713
113864
ENSAPLT00000033712
20958094 - 21027713
69620