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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21008104_21014446_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21008104 - 21014446
Intron Length:
6343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTCCTTATTT
Flanking Amino Acid:
LAYKTALRAMRLLVLESTAP
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
83.9
34.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.6
0.82
0.7
85
28.1
Minor 5ss
48.2
-0.2
2.5
69.3
41.2
Minor BPS
75.3
0.87
1.5
87.57
38.6

Associated Gene:

Gene:
ZSWIM6
Ensembl Gene ID:
ENSAPLG00000006992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007273
20944692 - 21027713
83022
ENSAPLT00000046134
20911869 - 21027713
115845
ENSAPLT00000036097
20913850 - 21027713
113864
ENSAPLT00000033712
20958094 - 21027713
69620
ENSAPLT00000030079
20945803 - 21027713
81911
ENSAPLT00000047151
20946524 - 21027713
81190