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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21015299_21019659_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21015299 - 21019659
Intron Length:
4361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTA
5'SS Class:
major
3'SS Sequence:
GTTGTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
GTTGTTTTAATA
Flanking Amino Acid:
LKVSLELGLQVMRMTLSTLN
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
73.6
0.53
1
69.9
40.3
Minor 5ss
44
-0.7
2.8
59
45.4
Minor BPS
65.8
0.49
1.3
70.9
36

Associated Gene:

Gene:
ZSWIM6
Ensembl Gene ID:
ENSAPLG00000006992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007273
20944692 - 21027713
83022
ENSAPLT00000046134
20911869 - 21027713
115845
ENSAPLT00000036097
20913850 - 21027713
113864
ENSAPLT00000033712
20958094 - 21027713
69620
ENSAPLT00000030079
20945803 - 21027713
81911
ENSAPLT00000047151
20946524 - 21027713
81190