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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21019742_21022106_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21019742 - 21022106
Intron Length:
2365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATCAGTT
Flanking Amino Acid:
RWLVTCATEVGVYALDSIMQ
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
88.6
0.87
0.7
80.8
31.2
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
47.3
-0.1
2
70.05
40.9

Associated Gene:

Gene:
ZSWIM6
Ensembl Gene ID:
ENSAPLG00000006992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030079
20945803 - 21027713
81911
ENSAPLT00000047151
20946524 - 21027713
81190
ENSAPLT00000007273
20944692 - 21027713
83022
ENSAPLT00000046134
20911869 - 21027713
115845
ENSAPLT00000036097
20913850 - 21027713
113864
ENSAPLT00000033712
20958094 - 21027713
69620