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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_2114472_2118102_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2114472 - 2118102
Intron Length:
3631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
CTCACCTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTCCTTAACT
Flanking Amino Acid:
TTGNATGGQQQQYRECQELL
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75
0.56
0.8
65.4
36
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
100
1.65
0.3
108.3
8.33

Associated Gene:

Gene:
KIAA1328
Ensembl Gene ID:
ENSAPLG00000004859
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034733
2114325 - 2218414
104090