About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_212036_213409_R


Intron Information:

Intron Rank:
23

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
212036 - 213409

Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAGTGTAA

5'SS Class:
major

3'SS Sequence:
TGTCTCTGTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TATTAAC

U12 Branch Point Sequence:
AGTGCTTGAACT

Flanking Amino Acid:
LTSITFFRMKVQELQSPPRA

Intron Amino Acid Position:
948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.6
0.49
1.1
64.7
37.7

Major BPS
81.9
0.79
0.8
81.9
25

Major PPT
77.9
0.63
0.9
73
37.3

Minor 5ss
34.7
-1.7
3.5
46.2
49

Minor BPS
62
0.45
1.6
76.06
40.4

Associated Gene:

Gene:
UNC13B

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

161360 - 353765
192406

161360 - 370186
208827

161360 - 370186
208827