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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21257558_21278588_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21257558 - 21278588
Intron Length:
21031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCAGCGGC
5'SS Class:
major
3'SS Sequence:
GTTTCCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGTTAATAAAT
Flanking Amino Acid:
GIYVEIKRSDGRIHQAMVTS
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
55.9
42.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.1
0.68
0.9
70.7
39.8
Minor 5ss
32.2
-2
3.2
38.8
41.7
Minor BPS
47.1
-0.1
2
66.93
43.4

Associated Gene:

Gene:
KIF2A
Ensembl Gene ID:
ENSAPLG00000009519
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009960
21257494 - 21309662
52169