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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21278684_21279977_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21278684 - 21279977
Intron Length:
1294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATTCCTTTAAAC
Flanking Amino Acid:
IENGDTKGKEIDLESIFSLN
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
75.9
0.58
0.9
73.3
34.9
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
70.1
0.61
1.3
75.83
33.5

Associated Gene:

Gene:
KIF2A
Ensembl Gene ID:
ENSAPLG00000009519
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016175
21257555 - 21309662
52108
ENSAPLT00000009960
21257494 - 21309662
52169
ENSAPLT00000006864
21257555 - 21309662
52108