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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21280098_21280513_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21280098 - 21280513
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTAAC
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
GATCAAATAACA
Flanking Amino Acid:
PSAKVNKIVKSRRTVAPIKN
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
73.5
37.5
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
88.3
0.86
0.6
84.7
22.9
Minor 5ss
31
-2.2
2.8
36.5
40.6
Minor BPS
45.4
-0.3
2
59.15
38.9

Associated Gene:

Gene:
KIF2A
Ensembl Gene ID:
ENSAPLG00000009519
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016175
21257555 - 21309662
52108
ENSAPLT00000009960
21257494 - 21309662
52169
ENSAPLT00000006864
21257555 - 21309662
52108