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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21280569_21282027_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21280569 - 21282027
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACATCT
Flanking Amino Acid:
KNDTPTRDNRVVGSARARPT
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
87.2
27.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
38.7
-1.3
3.4
58.4
46.2
Minor BPS
51.6
0.13
2.1
81
40.6

Associated Gene:

Gene:
KIF2A
Ensembl Gene ID:
ENSAPLG00000009519
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009960
21257494 - 21309662
52169
ENSAPLT00000006864
21257555 - 21309662
52108
ENSAPLT00000016175
21257555 - 21309662
52108