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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21282829_21285121_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21282829 - 21285121
Intron Length:
2293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATGTAAGAAATT
Flanking Amino Acid:
QQELREKRAQDVDATNPNYE
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
77.6
0.62
0.8
69.8
36.7
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
39.4
-0.7
2.4
60.12
43.6

Associated Gene:

Gene:
KIF2A
Ensembl Gene ID:
ENSAPLG00000009519
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016175
21257555 - 21309662
52108
ENSAPLT00000009960
21257494 - 21309662
52169
ENSAPLT00000006864
21257555 - 21309662
52108