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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21285917_21289841_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21285917 - 21289841
Intron Length:
3925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACCA
5'SS Class:
strong_major
3'SS Sequence:
ACTTATTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCACTTATTT
Flanking Amino Acid:
CVRKRPLNKKETLMKDLDVI
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
67
38.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.7
0.65
0.8
72.9
36.5
Minor 5ss
38.3
-1.3
3
48.9
46.8
Minor BPS
62.1
0.46
1.8
82.67
38.5

Associated Gene:

Gene:
KIF2A
Ensembl Gene ID:
ENSAPLG00000009519
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016175
21257555 - 21309662
52108
ENSAPLT00000009960
21257494 - 21309662
52169
ENSAPLT00000006864
21257555 - 21309662
52108