Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21293404_21293543_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21293404 - 21293543

Intron Length:

140

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTAATGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTTTTTTAATG

Flanking Amino Acid:

YGQTGSGKTHTMGGDFSGKN

Intron Amino Acid Position:

335

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

92.9

22.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.72

0.8

79.2

33.1

Minor 5ss

44.1

-0.6

2.9

65.1

39.1

Minor BPS

72.1

0.55

1.2

71.21

36.3

Associated Gene:

Gene:

KIF2A

Ensembl Gene ID:

ENSAPLG00000009519

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016175

21257555 - 21309662

52108

ENSAPLT00000009960

21257494 - 21309662

52169

ENSAPLT00000006864

21257555 - 21309662

52108