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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_21295452_21299345_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21295452 - 21299345
Intron Length:
3894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTAACATTGAAT
Flanking Amino Acid:
EINKSLLALKECIRALGRNK
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.6
32.8
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
37.5
-1.4
3.2
49
47.2
Minor BPS
54.7
0.23
1.8
75.64
40.2

Associated Gene:

Gene:
KIF2A
Ensembl Gene ID:
ENSAPLG00000009519
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016175
21257555 - 21309662
52108
ENSAPLT00000009960
21257494 - 21309662
52169
ENSAPLT00000006864
21257555 - 21309662
52108